biodiversity Archives - Autophagy

Long-term adaptation replaces evolution (2)

Oct 23, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Cytosis, Diseases & Disorders, Ecology, Human Brain, Human Pheromones, Model Organisms, Nutrigenomics, Physics, RNA-directed DNA methylation, RNA-mediated gene silencing, RNA–Mediated Epigenetic Heredityamino acid substitutions, autophagy, biodiversity, biophysically constrained, chirality, de novo Creation, doubling up, food energy-dependent, G-protein-coupled receptors, junk DNA, pheromone-controlled reproduction, sense of smell, supercoiled DNA, viral hecatomb

The food energy-dependent “doubling up” on ‘junk DNA’ is biophysically constrained by the physiology of pheromone-controlled reproduction. The metabolism of food to species-specific pheromones links the conserved molecular mechanisms of RNA-mediated cell type differentiation in all individuals of all living genera to healthy longevity via what is known about amino acid substitutions in supercoiled DNA, which […]

Predicting who wins the 2017 Nobel Prizes (4)

Oct 3, 2017James KohlAdaptations, Autophagy, biophotonics, Ecology, Light Energy, Physics, RNA Directed, Subatomic, Variationsanti-entropic virucidal energy, attosecond photoelectron wavepackets, attosecond science, attoseconds, autophagy, biodiversity, Chiral spin modes, ecosystem, electron dynamics, electron-proton, electronic binding potentials, electrons escaping atoms, energy-dependent information processing, experimental results, femtosecond, hydrogen-atom transfer in DNA base pairs in solution, intermolecular hydrogen bonds, photoexcited base pairs, Polarization-entangled photons, positron-proton, quantized energy, quantum information processing, quintillionths of a second, reformation of the intact thymine (T) bases, seed germination, Sequence Selective Self-Repair, spinning electrons, theoretical results, Tropical diversity, two-photon exchange, UV photochemistry, UV-Induced Charge Transfer States

As you wait to learn who won the 2017 Nobel Prize in Physics and in Chemistry, please consider how these recent reports will be linked from electrons to ecosystems. Every aspect must start with the creation of energy, which must link chemistry to biophysically constrained biologically based life on Earth in the context of the […]

MicroRNAs GnRH and the failure of sex research

Jun 16, 2017James KohlAdaptations, Alternative Splicings, Autophagy, Diseases & Disorders, Ecology, Human Brain, Human Pheromones, Model Organisms, Neuronal Plasticity, Nutrigenomics, Physics, RNA Directed, RNA interference, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA-mediated toxicity, RNA–Mediated Epigenetic Heredity, VariationsAdkins-Regan, alternative splicing, anti-entropic virucidal energy, Archives of Sexual Behavior, atoms to ecosystems, automagically assemble, autophagy, Bakker, Balthazart, Baum, biodiversity, Breedlove, chirality, chromosomal inheritance, de novo Creation, de novo creation of microRNAs, energy-dependent RNA-mediated cell type differentiation, Evidentiary Convergence, feedback loops, fertility, flanking sequences, Helicity, human idiocy, Human Sexual Orientation, hypothalamic control, LeVay, McFadden, microRNA flanking sequences, microRNA-mediated cause and effect, microRNAs, molecular epigenetics, mutations, odor, pathology, pheromone signaling, pheromone-controlled physiology of reproduction, pre-mRNA, pseudoscientists, quantized energy-dependent, sexual differentiation, social scientists, ultraviolet light, virus-driven degradation of messenger RNA

Summary: “The Bull Sperm MicroRNAome and the Effect of Fescue Toxicosis on Sperm MicroRNA Expression” accurately represents what is known about food energy-dependent RNA-mediated cell type differentiation in species from soil microbes to humans. MicroRNAs are not new players in the hypothalamic control of fertility and the effects of food odors and pheromones on microRNAs […]

Draining the academic swamp of parasites

May 3, 2017James KohlAdaptations, Autophagy, Diseases & Disorders, Ecology, Model Organisms, RNA Directed, RNA-directed DNA methylation, Variationsapoptosis, autophagy, biodiversity, biophysically constrained, blood sugar, brain cancer, chromosomal inheritance, Commensal bacteria, Conflict of Interest, Ecological model, energy as information, energy-dependent, energy-dependent RNA-mediated DNA repair, essential amino acids, feedback loops, food odors, hydrogen-atom transfer in DNA base pairs in solution, Ian Hodder, microRNA, nutrient energy-dependent microRNAs, pathology, pheromones, Resource availability, RNA-mediated, species abundance, supercoiled DNA, Suzan Mazur, Top-down causation, Transcription, virus-driven degradation of messenger RNA

National Academies Revise Conflict of Interest Policy The proposed changes follow revelations in recent years that committee members preparing reports for the Academies did not disclose industry relationships. By Ashley P. Taylor | May 3, 2017 Excerpt: They are also thinking about including not only current activities and relationships, as they do now, but past […]

Theistic evolutionists fight back and lose

Feb 24, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Light Energy, Model Organisms, Neuronal Plasticity, Nutrigenomics, Physics, RNA Directed, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA–Mediated Epigenetic Heredity, Variations, What's in the News3D reconstructions, amino acid sequence, anti-entropic virucidal energy, antigenic changes, autophagy, Bill Gates, biodiversity, biophysically constrained, C. elegans, Caenorhabditis elegans, cell type differentiation, chirality, class II fusion proteins, coding sequences, critical thinking skills, Dauer Formation, de novo Creation, DNA repair, dysfunctional, ecological adaptations, endogenous RNA interference, Endogenous RNAi Pathways, energy-dependent codon optimality, evolutionary relationships, Femtosecond blasts of UV light, function, genes, Human Embryos, hydrogen atoms, innate immune system, Malnourished children, Mutational Processes, neurons, nfluenza virus, nutrient energy-dependent, nutrient energy-dependent structure, P. Pacificus, Paul Allen, pheromone-controlled reproduction, ridiculous claims, RNA-mediated amino acid substitutions, single amino acid, structure, sunlight, supercoiled DNA, theistic evolution, viral latency, Virus-driven energy theft

A giant neuron found wrapped around entire mouse brain Yuste and Eberwine would like to see 3D reconstructions of individual neurons compared to analyses of the genes expressed in those neurons. This may offer clues as to the type and function of each cell. The nutrient energy-dependent structure and function of all cell types in […]

George Church refutes theistic evolution (3)

Feb 12, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Human Brain, Human Pheromones, Light Energy, Model Organisms, Nutrigenomics, Physics, RNA Directed, RNA interference, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA-mediated toxicity, RNA–Mediated Epigenetic Heredity, Variationsangstroms to ecosystems, anti-entropic, atheism, autophagy, biodiversity, chirality, chromosomal inheritance, Codon optimality, CRISPR, ecological adaptation, ecological variation, endogenous RNA interference, energy-dependent, feedback loops, geographical traps, healthy longevity, Human Diseases, microbiome, microRNA profiling, microRNA/messenger RNA balance, miRNAs, National Microbiome Initiative, natural selection, Odor and Pheromone Signaling, Optokinetically encoded, pathology, physiology of reproduction, Phytoremediation, Precision Medicine Initiative, religion, solar storms, supercoiled DNA, virucidal energy, Virus-driven energy theft

Fifty years of illumination about the natural levels of adaptation … George C. Williams developed in his 1966 book Adaptation and Natural Selection the essentials of a unifying theory of adaptation that remains robust today and has inspired immense progress in understanding how natural selection works. Light Could Propel Nanorobots on a “Fantastic Voyage” Through […]

George Church refutes theistic evolution (2)

Feb 10, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Human Brain, Human Pheromones, Light Energy, Model Organisms, Neuronal Plasticity, Nutrigenomics, Physics, RNA Directed, RNA interference, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA-mediated toxicity, RNA–Mediated Epigenetic Heredity, Variationsalternative RNA splicings, autophagy, biodiversity, biophysically constrained, chemistry, chirality, chromosomal inheritance, Codon optimality, ecological variation, endogenous RNA interference, energy as information, G-protein-coupled receptors, George Church, Hecatombic evolution, hydrogen-atom transfer in DNA base pairs in solution, innate immune system, National Microbiome Initiative, natural selection, negative supercoiling, polycombic ecological adaptations, Precision Medicine Initiative, protein-folding, quantum physics, quorum sensing, RNA-directed DNA methylation, sunlight, supercoiled DNA, theistic evolution, transgenerational epigenetic inheritance, viral hecatomb

See: George Church refutes theistic evolution George Church may not know that he refuted every aspect of theistic evolution in his presentation on February 8, 2017. Hopefully, someone will tell him how he linked quantum physics from chemistry to biophysically constrained protein folding and all biodiversity, or explain to others how he did that. Here […]

Natural selection for codon optimality and quantum viruses

Feb 6, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Human Brain, Human Pheromones, Light Energy, Model Organisms, Neuronal Plasticity, Nutrigenomics, Pharmacogenomics, Physics, RNA Directed, RNA interference, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA-mediated toxicity, RNA–Mediated Epigenetic Heredity, Variationsautophagy, biodiversity, biophysically constrained, cellular degradation, endogenous RNA interference, imino photons, Matti Pitkänen, messenger RNA degradation, microRNA precursor, microRNA/messenger RNA, microRNAs, protein folding chemistry, residues, RNA-mediated amino acid substitutions, temperature-responsive flowering, tipping point, Virus-driven energy theft

Life is Quantum Life is energy-dependent. Energy is information. Life is not quantum except in the context of hydrogen-atom energy transfer in DNA base pairs in solution. Claims that do not also address the effects of virus-driven energy theft fail to link what is know about quantum physics from the creation of the sun to […]

Physicists: Desperate Acts (revisited)

Feb 6, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Light Energy, Model Organisms, Nutrigenomics, Physics, RNA Directed, RNA-directed DNA methylation, Variationsadaptation, adelic physics, Amino Acid, amino acid substitutions, autophagy, bio-catalysis, biodiversity, chirality, Coevolutionary dynamics, Coulomb potential, dark binding energy, ecological adaptation, endogenous RNA interference, energies of the hydrogen atom, energy-efficient proton transport, Epigenetic, Food seeking, gamma oscillations, hydrino-like states, Matti Pitkänen, microRNA, natural information processing, number theoretic physics, nutrient-dependent, phenotypic diversity, pheromone-controlled, physiology, Poliovirus Capsid Stability, quantum biology, reproduction, Reversible H2/H+ Interconversion, RNA-mediated, Schrödinger equation, supercoiled DNA, Thomas Hunt Morgan, Virus-driven energy theft, Virus-Like Particle

Physicists: Desperate Acts Light-induced endogenous RNA interference in bioluminescent microbes links Schrodinger’s claims in “What is LIfe?” (1944) from a light-to-chemical pathway of information exchange in all living genera via amino acid substitutions in supercoiled DNA. All subsequent works on the evolutionary synthesis failed to link the anti-entropic virucidal energy of sunlight to Darwin’s “conditions […]

Energy as information and constrained endogenous RNA interference (3)

Feb 5, 2017James KohlAdaptations, Alternative Splicings, Autophagy, biophotonics, Diseases & Disorders, Ecology, Light Energy, Model Organisms, Neuronal Plasticity, Physics, RNA Directed, RNA interference, RNA methylation, RNA-directed DNA methylation, RNA-mediated epigenetic regulation of gene expression, RNA-mediated gene silencing, RNA-mediated toxicity, RNA–Mediated Epigenetic Heredity, VariationsAmerican Society for Microbiology, Archaea, autophagy, bacteria, Ben Feringa, bio-catalysis, biodiversity, biophysically constrained, Codon optimality, Coevolutionary dynamics, Computational Biology, cooperation, DNA base pairs in solution, emergence and persistence, endogenous RNA interference, energy-dependent, energy-efficient proton transport, Evolutionary Dynamics, evolutionary time, feedback loops, food consumption, Food seeking, gamma oscillations, genomic entropy, Hydrogen-Atom Transfer, James Shapiro, Natural Genetic Engineering, natural selection, optogenetics, phenotypic diversity, protein folding chemistry, Shapiro, supercoiled DNA, top-down signalling, transgenerational epigenetic inheritance, Virus-driven energy theft, virus-driven entropy, Zika virus-damaged DNA

See also: Energy as information and constrained endogenous RNA interference (2) The Scope (Febrary 4, 2017) On World Cancer Day, we’re featuring some of the most exciting research developments of the past year. First up? Yoshinori Ohsumi, Nobel laureate, whose research could save your life. 2016 Nobel Prize Winner Yoshinori Ohsumi’s Discoveries Could Change How […]

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